SNP Detail For rs219780
1.Mapping Information
Human SNP ID rs219780
Human chromosome chr21
Human SNP position 36461009
Pig chromosome chr13
Pig SNP position 210156688
2.Annotation Information
PubMed ID19561606
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19561606
StudySequence variants in the CLDN14 gene associate with kidney stones and bone mineral density.
Disease/TraitKidney stones
Initial sample1,507 European ancestry cases, 34,033 European ancestry controls
Replication sample2,266 European ancestry cases, 8,477 European ancestry controls
Region21q22.13
Chromosome idchr21
Chromosome position36461009
Reported geneCLDN14
Mapped geneCLDN14, LOC105369301
Upstream gene id
Downstream gene id
SNP gene ids23562, 105369301
Upstream gene distance
Downstream gene distance
SNP risk allelers219780-C
SNPsrs219780
Merged0
SNP id current219780
Contextsynonymous_variant
Intergenic0
Allele frequency0.79
P value0.000000000004
Pvalue mlog11.397940008672
P value text
Or beta1.25
%95 Ci[1.17-1.33]
PlatformIllumina [303120]
CNVN
Mapped traitkidney stone
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003845
Study accessionGCST000429