Human SNP ID | rs219780 |
---|---|
Human chromosome | chr21 |
Human SNP position | 36461009 |
Pig chromosome | chr13 |
Pig SNP position | 210156688 |
PubMed ID | 19561606 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19561606 |
Study | Sequence variants in the CLDN14 gene associate with kidney stones and bone mineral density. |
Disease/Trait | Kidney stones |
Initial sample | 1,507 European ancestry cases, 34,033 European ancestry controls |
Replication sample | 2,266 European ancestry cases, 8,477 European ancestry controls |
Region | 21q22.13 |
Chromosome id | chr21 |
Chromosome position | 36461009 |
Reported gene | CLDN14 |
Mapped gene | CLDN14, LOC105369301 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23562, 105369301 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs219780-C |
SNPs | rs219780 |
Merged | 0 |
SNP id current | 219780 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.79 |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.17-1.33] |
Platform | Illumina [303120] |
CNV | N |
Mapped trait | kidney stone |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003845 |
Study accession | GCST000429 |