SNP Detail For rs2190016
1.Mapping Information
Human SNP ID rs2190016
Human chromosome chr7
Human SNP position 46905209
Pig chromosome chr18
Pig SNP position 54213734
2.Annotation Information
PubMed ID25342443
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25342443
StudyGenome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk.
Disease/TraitMammographic density (non-dense area)
Initial sample7,600 European ancestry individuals
Replication sample343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals
Region7p12.3
Chromosome idchr7
Chromosome position46905209
Reported geneintergenic
Mapped geneLOC730338 - LOC105375267
Upstream gene id730338
Downstream gene id105375267
SNP gene ids
Upstream gene distance208087
Downstream gene distance64483
SNP risk allelers2190016-T
SNPsrs2190016
Merged0
SNP id current2190016
Contextintron_variant
Intergenic1
Allele frequency0.62
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitnon-dense area measurement, mammographic density measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006504, http://www.ebi.ac.uk/efo/EFO_0005941
Study accessionGCST002668