Human SNP ID | rs2190016 |
---|---|
Human chromosome | chr7 |
Human SNP position | 46905209 |
Pig chromosome | chr18 |
Pig SNP position | 54213734 |
PubMed ID | 25342443 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25342443 |
Study | Genome-wide association study identifies multiple loci associated with both mammographic density and breast cancer risk. |
Disease/Trait | Mammographic density (non-dense area) |
Initial sample | 7,600 European ancestry individuals |
Replication sample | 343 European ancestry individuals, 1,472 Old Order Amish individuals, 8,564 individuals |
Region | 7p12.3 |
Chromosome id | chr7 |
Chromosome position | 46905209 |
Reported gene | intergenic |
Mapped gene | LOC730338 - LOC105375267 |
Upstream gene id | 730338 |
Downstream gene id | 105375267 |
SNP gene ids | |
Upstream gene distance | 208087 |
Downstream gene distance | 64483 |
SNP risk allele | rs2190016-T |
SNPs | rs2190016 |
Merged | 0 |
SNP id current | 2190016 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.62 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | non-dense area measurement, mammographic density measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006504, http://www.ebi.ac.uk/efo/EFO_0005941 |
Study accession | GCST002668 |