Human SNP ID | rs2178146 |
---|---|
Human chromosome | chr16 |
Human SNP position | 86430089 |
Pig chromosome | chr6 |
Pig SNP position | 2927434 |
PubMed ID | 24121790 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Esophageal adenocarcinoma |
Initial sample | 1,516 European ancestry cases, 3,209 European ancestry controls |
Replication sample | 874 European ancestry cases, 6,911 European ancestry controls |
Region | 16q24.1 |
Chromosome id | chr16 |
Chromosome position | 86430089 |
Reported gene | FOXF1 |
Mapped gene | LINC00917 - FENDRR |
Upstream gene id | 732275 |
Downstream gene id | 400550 |
SNP gene ids | |
Upstream gene distance | 84410 |
Downstream gene distance | 44436 |
SNP risk allele | rs2178146-A |
SNPs | rs2178146 |
Merged | 0 |
SNP id current | 2178146 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.587 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.1765 |
%95 Ci | [1.1-1.27] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | esophageal adenocarcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000478 |
Study accession | GCST002232 |
PubMed ID | 24121790 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Digestive system disease (Barrett__s esophagus and esophageal adenocarcinoma combined) |
Initial sample | 3,928 European ancestry cases, 3,207 European ancestry controls |
Replication sample | 1,636 European ancestry cases, 6,911 European ancestry controls |
Region | 16q24.1 |
Chromosome id | chr16 |
Chromosome position | 86430089 |
Reported gene | FOXF1 |
Mapped gene | LINC00917 - FENDRR |
Upstream gene id | 732275 |
Downstream gene id | 400550 |
SNP gene ids | |
Upstream gene distance | 84410 |
Downstream gene distance | 44436 |
SNP risk allele | rs2178146-A |
SNPs | rs2178146 |
Merged | 0 |
SNP id current | 2178146 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.587 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.1364 |
%95 Ci | [1.09-1.2] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | esophageal adenocarcinoma, digestive system disease, Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000478, http://www.ebi.ac.uk/efo/EFO_0000405, http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST002231 |