SNP Detail For rs2173226
1.Mapping Information
Human SNP ID rs2173226
Human chromosome chr5
Human SNP position 2724248
Pig chromosome chr16
Pig SNP position 84879128
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region5p15.33
Chromosome idchr5
Chromosome position2724248
Reported geneintergenic
Mapped geneLOC100506858 - IRX2
Upstream gene id100506858
Downstream gene id153572
SNP gene ids
Upstream gene distance412047
Downstream gene distance17615
SNP risk allelers2173226-G
SNPsrs2173226
Merged0
SNP id current2173226
Contextintergenic_variant
Intergenic1
Allele frequency0.342
P value0.000008
Pvalue mlog5.09691001300805
P value text(Hip circumference change )
Or beta0.03
%95 Ci[NR] cm/y increase
PlatformIllumina [899892]
CNVN
Mapped traithip circumference
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005093
Study accessionGCST001762