Human SNP ID | rs2173226 |
---|---|
Human chromosome | chr5 |
Human SNP position | 2724248 |
Pig chromosome | chr16 |
Pig SNP position | 84879128 |
PubMed ID | 23251661 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23251661 |
Study | Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. |
Disease/Trait | Obesity-related traits |
Initial sample | 815 Hispanic children from 263 families |
Replication sample | NA |
Region | 5p15.33 |
Chromosome id | chr5 |
Chromosome position | 2724248 |
Reported gene | intergenic |
Mapped gene | LOC100506858 - IRX2 |
Upstream gene id | 100506858 |
Downstream gene id | 153572 |
SNP gene ids | |
Upstream gene distance | 412047 |
Downstream gene distance | 17615 |
SNP risk allele | rs2173226-G |
SNPs | rs2173226 |
Merged | 0 |
SNP id current | 2173226 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.342 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | (Hip circumference change ) |
Or beta | 0.03 |
%95 Ci | [NR] cm/y increase |
Platform | Illumina [899892] |
CNV | N |
Mapped trait | hip circumference |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005093 |
Study accession | GCST001762 |