SNP Detail For rs2173063
1.Mapping Information
Human SNP ID rs2173063
Human chromosome chr15
Human SNP position 92588402
Pig chromosome chr7
Pig SNP position 92279537
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitSubcutaneous adipose tissue
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region15q26.1
Chromosome idchr15
Chromosome position92588402
Reported geneLOC400451
Mapped genePIRC76 - LOC105370978
Upstream gene id100313796
Downstream gene id105370978
SNP gene ids
Upstream gene distance6727
Downstream gene distance3219
SNP risk allelers2173063-A
SNPsrs2173063
Merged0
SNP id current2173063
Contextintron_variant
Intergenic1
Allele frequency0.06
P value0.000003
Pvalue mlog5.52287874528033
P value text(men)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitsubcutaneous adipose tissue measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004766
Study accessionGCST001521