Human SNP ID | rs2173063 |
---|---|
Human chromosome | chr15 |
Human SNP position | 92588402 |
Pig chromosome | chr7 |
Pig SNP position | 92279537 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Subcutaneous adipose tissue |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 15q26.1 |
Chromosome id | chr15 |
Chromosome position | 92588402 |
Reported gene | LOC400451 |
Mapped gene | PIRC76 - LOC105370978 |
Upstream gene id | 100313796 |
Downstream gene id | 105370978 |
SNP gene ids | |
Upstream gene distance | 6727 |
Downstream gene distance | 3219 |
SNP risk allele | rs2173063-A |
SNPs | rs2173063 |
Merged | 0 |
SNP id current | 2173063 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.06 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (men) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | subcutaneous adipose tissue measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004766 |
Study accession | GCST001521 |