Human SNP ID | rs2172820 |
---|---|
Human chromosome | chr8 |
Human SNP position | 15468159 |
Pig chromosome | chr17 |
Pig SNP position | 3298442 |
PubMed ID | 24483146 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/24483146 |
Study | Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines. |
Disease/Trait | Response to cytadine analogues (cytosine arabinoside) |
Initial sample | 60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 8p22 |
Chromosome id | chr8 |
Chromosome position | 15468159 |
Reported gene | TUSC3 |
Mapped gene | SGCZ - TUSC3 |
Upstream gene id | 137868 |
Downstream gene id | 7991 |
SNP gene ids | |
Upstream gene distance | 229876 |
Downstream gene distance | 71928 |
SNP risk allele | rs2172820-? |
SNPs | rs2172820 |
Merged | 0 |
SNP id current | 2172820 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [1348798] |
CNV | N |
Mapped trait | response to cytosine arabinoside |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005655 |
Study accession | GCST002345 |