SNP Detail For rs2172820
1.Mapping Information
Human SNP ID rs2172820
Human chromosome chr8
Human SNP position 15468159
Pig chromosome chr17
Pig SNP position 3298442
2.Annotation Information
PubMed ID24483146
JournalBMC Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/24483146
StudyDiscovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.
Disease/TraitResponse to cytadine analogues (cytosine arabinoside)
Initial sample60 European ancestry lymphoblastoid cell lines, 54 African American lymphoblastoid cell lines, 60 Han Chinese ancestry lymphoblastoid cell lines
Replication sampleNA
Region8p22
Chromosome idchr8
Chromosome position15468159
Reported geneTUSC3
Mapped geneSGCZ - TUSC3
Upstream gene id137868
Downstream gene id7991
SNP gene ids
Upstream gene distance229876
Downstream gene distance71928
SNP risk allelers2172820-?
SNPsrs2172820
Merged0
SNP id current2172820
Contextintron_variant
Intergenic1
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [1348798]
CNVN
Mapped traitresponse to cytosine arabinoside
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005655
Study accessionGCST002345