SNP Detail For rs2163950
1.Mapping Information
Human SNP ID rs2163950
Human chromosome chr8
Human SNP position 129585339
Pig chromosome chr4
Pig SNP position 11175163
2.Annotation Information
PubMed ID25096241
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25096241
StudyTrans-ethnic meta-analysis of white blood cell phenotypes.
Disease/TraitWhite blood cell count
Initial sample16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals
Replication sampleNA
Region8q24.21
Chromosome idchr8
Chromosome position129585339
Reported geneintergenic
Mapped geneCCDC26
Upstream gene id
Downstream gene id
SNP gene ids137196
Upstream gene distance
Downstream gene distance
SNP risk allelers2163950-A
SNPsrs2163950
Merged0
SNP id current2163950
Contextintron_variant
Intergenic0
Allele frequency0.174
P value0.000000005
Pvalue mlog8.30102999566398
P value text(Japanese)
Or beta0.021
%95 Ci[0.013-0.029] unit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitleukocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004308
Study accessionGCST002556
PubMed ID25096241
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25096241
StudyTrans-ethnic meta-analysis of white blood cell phenotypes.
Disease/TraitWhite blood cell count
Initial sample16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals
Replication sampleNA
Region8q24.21
Chromosome idchr8
Chromosome position129585339
Reported geneintergenic
Mapped geneCCDC26
Upstream gene id
Downstream gene id
SNP gene ids137196
Upstream gene distance
Downstream gene distance
SNP risk allelers2163950-?
SNPsrs2163950
Merged0
SNP id current2163950
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.0167
%95 Ci[0.011-0.022] unit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitleukocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004308
Study accessionGCST002556