Human SNP ID | rs2160387 |
---|---|
Human chromosome | chr2 |
Human SNP position | 64993776 |
Pig chromosome | chr3 |
Pig SNP position | 80822311 |
PubMed ID | 22286219 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22286219 |
Study | Genome-wide association study identifies multiple loci influencing human serum metabolite levels. |
Disease/Trait | Metabolite levels |
Initial sample | 8,330 European ancestry individuals |
Replication sample | NA |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 64993776 |
Reported gene | SLC1A4 |
Mapped gene | SLC1A4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6509 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2160387-? |
SNPs | rs2160387 |
Merged | 0 |
SNP id current | 2160387 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 3E-22 |
Pvalue mlog | 21.5228787452803 |
P value text | (Ala, Val) |
Or beta | 0.17 |
%95 Ci | [0.13-0.21] unit decrease |
Platform | Illumina [~ 7700000] (imputed) |
CNV | N |
Mapped trait | metabolite measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004725 |
Study accession | GCST001391 |