SNP Detail For rs2160387
1.Mapping Information
Human SNP ID rs2160387
Human chromosome chr2
Human SNP position 64993776
Pig chromosome chr3
Pig SNP position 80822311
2.Annotation Information
PubMed ID22286219
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22286219
StudyGenome-wide association study identifies multiple loci influencing human serum metabolite levels.
Disease/TraitMetabolite levels
Initial sample8,330 European ancestry individuals
Replication sampleNA
Region2p14
Chromosome idchr2
Chromosome position64993776
Reported geneSLC1A4
Mapped geneSLC1A4
Upstream gene id
Downstream gene id
SNP gene ids6509
Upstream gene distance
Downstream gene distance
SNP risk allelers2160387-?
SNPsrs2160387
Merged0
SNP id current2160387
Contextintron_variant
Intergenic0
Allele frequencyNR
P value3E-22
Pvalue mlog21.5228787452803
P value text(Ala, Val)
Or beta0.17
%95 Ci[0.13-0.21] unit decrease
PlatformIllumina [~ 7700000] (imputed)
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST001391