SNP Detail For rs2159767
1.Mapping Information
Human SNP ID rs2159767
Human chromosome chrX
Human SNP position 148299501
Pig chromosome chrX
Pig SNP position 138119770
2.Annotation Information
PubMed ID18347602
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/18347602
StudyGenomewide association for schizophrenia in the CATIE study: results of stage 1.
Disease/TraitSchizophrenia
Initial sample417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispani
Replication sampleNA
RegionXq28
Chromosome idchrX
Chromosome position148299501
Reported geneintergenic
Mapped geneLOC100129661 - RPL7L1P11
Upstream gene id100129661
Downstream gene id347509
SNP gene ids
Upstream gene distance100522
Downstream gene distance165184
SNP risk allelers2159767-?
SNPsrs2159767
Merged0
SNP id current2159767
Contextintergenic_variant
Intergenic1
Allele frequency0.62
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.33
%95 Ci[NR]
PlatformAffymetrix [492900]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST000164