Human SNP ID | rs2159767 |
---|---|
Human chromosome | chrX |
Human SNP position | 148299501 |
Pig chromosome | chrX |
Pig SNP position | 138119770 |
PubMed ID | 18347602 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/18347602 |
Study | Genomewide association for schizophrenia in the CATIE study: results of stage 1. |
Disease/Trait | Schizophrenia |
Initial sample | 417 European ancestry cases, 411 European ancestry controls, 217 African American cases, 219 African American controls, 104 American Indian, Asian, Pacific Islander or Hispanic/Latino ancestry cases, 103 American Indian, Asian, Pacific Islander or Hispani |
Replication sample | NA |
Region | Xq28 |
Chromosome id | chrX |
Chromosome position | 148299501 |
Reported gene | intergenic |
Mapped gene | LOC100129661 - RPL7L1P11 |
Upstream gene id | 100129661 |
Downstream gene id | 347509 |
SNP gene ids | |
Upstream gene distance | 100522 |
Downstream gene distance | 165184 |
SNP risk allele | rs2159767-? |
SNPs | rs2159767 |
Merged | 0 |
SNP id current | 2159767 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.62 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.33 |
%95 Ci | [NR] |
Platform | Affymetrix [492900] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST000164 |