SNP Detail For rs2157453
1.Mapping Information
Human SNP ID rs2157453
Human chromosome chr1
Human SNP position 172894808
Pig chromosome chr9
Pig SNP position 126810097
2.Annotation Information
PubMed ID24999842
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24999842
StudyGenome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.
Disease/TraitCeliac disease
Initial sample1,550 European ancestry cases, 3,084 European ancestry controls
Replication sampleNA
Region1q24.3
Chromosome idchr1
Chromosome position172894808
Reported geneTNFSF18, TNFSF4, FASLG
Mapped geneLOC105371618 - TNFSF18
Upstream gene id105371618
Downstream gene id8995
SNP gene ids
Upstream gene distance58733
Downstream gene distance146412
SNP risk allelers2157453-?
SNPsrs2157453
Merged0
SNP id current2157453
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.0000008
Pvalue mlog6.09691001300805
P value text
Or beta1.29
%95 Ci[1.17鈥?.42]
PlatformIllumina [517345]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST002520