Human SNP ID | rs2157453 |
---|---|
Human chromosome | chr1 |
Human SNP position | 172894808 |
Pig chromosome | chr9 |
Pig SNP position | 126810097 |
PubMed ID | 24999842 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24999842 |
Study | Genome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus. |
Disease/Trait | Celiac disease |
Initial sample | 1,550 European ancestry cases, 3,084 European ancestry controls |
Replication sample | NA |
Region | 1q24.3 |
Chromosome id | chr1 |
Chromosome position | 172894808 |
Reported gene | TNFSF18, TNFSF4, FASLG |
Mapped gene | LOC105371618 - TNFSF18 |
Upstream gene id | 105371618 |
Downstream gene id | 8995 |
SNP gene ids | |
Upstream gene distance | 58733 |
Downstream gene distance | 146412 |
SNP risk allele | rs2157453-? |
SNPs | rs2157453 |
Merged | 0 |
SNP id current | 2157453 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | |
Or beta | 1.29 |
%95 Ci | [1.17鈥?.42] |
Platform | Illumina [517345] |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST002520 |