SNP Detail For rs2154294
1.Mapping Information
Human SNP ID rs2154294
Human chromosome chr14
Human SNP position 42186072
Pig chromosome chr1
Pig SNP position 192073776
2.Annotation Information
PubMed ID21529783
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21529783
StudyA quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.
Disease/TraitAlcoholism (12-month weekly alcohol consumption)
Initial sample2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls
Replication sample3,393 European ancestry individuals
Region14q21.1
Chromosome idchr14
Chromosome position42186072
Reported geneintergenic
Mapped geneLRFN5 - LOC105370470
Upstream gene id145581
Downstream gene id105370470
SNP gene ids
Upstream gene distance281523
Downstream gene distance1122609
SNP risk allelers2154294-G
SNPsrs2154294
Merged0
SNP id current2154294
Contextintergenic_variant
Intergenic1
Allele frequency0.44
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.08
%95 Ci[NR] unit increase
PlatformIllumina [~ 300000]
CNVN
Mapped traitalcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST001055