Human SNP ID | rs2154294 |
---|---|
Human chromosome | chr14 |
Human SNP position | 42186072 |
Pig chromosome | chr1 |
Pig SNP position | 192073776 |
PubMed ID | 21529783 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/21529783 |
Study | A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications. |
Disease/Trait | Alcoholism (12-month weekly alcohol consumption) |
Initial sample | 2,062 European ancestry alcohol dependence cases, 6,692 European ancestry controls |
Replication sample | 3,393 European ancestry individuals |
Region | 14q21.1 |
Chromosome id | chr14 |
Chromosome position | 42186072 |
Reported gene | intergenic |
Mapped gene | LRFN5 - LOC105370470 |
Upstream gene id | 145581 |
Downstream gene id | 105370470 |
SNP gene ids | |
Upstream gene distance | 281523 |
Downstream gene distance | 1122609 |
SNP risk allele | rs2154294-G |
SNPs | rs2154294 |
Merged | 0 |
SNP id current | 2154294 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.08 |
%95 Ci | [NR] unit increase |
Platform | Illumina [~ 300000] |
CNV | N |
Mapped trait | alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST001055 |