SNP Detail For rs2153960
1.Mapping Information
Human SNP ID rs2153960
Human chromosome chr6
Human SNP position 108666981
Pig chromosome chr1
Pig SNP position 84050496
2.Annotation Information
PubMed ID21216879
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21216879
StudyA genome-wide association study identifies novel loci associated with circulating IGF-I and IGFBP-3.
Disease/TraitInsulin-like growth factors
Initial sample10,280 European ancestry individuals
Replication sampleNA
Region6q21
Chromosome idchr6
Chromosome position108666981
Reported geneFOXO3
Mapped geneFOXO3
Upstream gene id
Downstream gene id
SNP gene ids2309
Upstream gene distance
Downstream gene distance
SNP risk allelers2153960-A
SNPsrs2153960
Merged0
SNP id current2153960
Contextintron_variant
Intergenic0
Allele frequency0.69
P value0.0000005
Pvalue mlog6.30102999566398
P value text(IGF-I)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitIGF-1 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004627
Study accessionGCST000937