SNP Detail For rs2153283
1.Mapping Information
Human SNP ID rs2153283
Human chromosome chr10
Human SNP position 58212538
Pig chromosome chr8
Pig SNP position 96661513
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region10q21.1
Chromosome idchr10
Chromosome position58212538
Reported geneNR
Mapped geneTPT1P10, IPMK
Upstream gene id
Downstream gene id
SNP gene ids101928715, 253430
Upstream gene distance
Downstream gene distance
SNP risk allelers2153283-?
SNPsrs2153283
Merged
SNP id current2153283
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000002
Pvalue mlog10.698970004336
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043