SNP Detail For rs2145272
1.Mapping Information
Human SNP ID rs2145272
Human chromosome chr20
Human SNP position 6645571
Pig chromosome chr17
Pig SNP position 17142308
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region20p12.3
Chromosome idchr20
Chromosome position6645571
Reported geneBMP2
Mapped geneCASC20 - LOC105372516
Upstream gene id101929244
Downstream gene id105372516
SNP gene ids
Upstream gene distance117112
Downstream gene distance85220
SNP risk allelers2145272-A
SNPsrs2145272
Merged0
SNP id current2145272
Contextintergenic_variant
Intergenic1
Allele frequency0.65
P value2E-24
Pvalue mlog23.698970004336
P value text
Or beta0.039
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25429064
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25429064
StudyMeta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.
Disease/TraitHeight
Initial sample36,227 East Asian ancestry individuals
Replication sample57,699 East Asian ancestry individuals
Region20p12.3
Chromosome idchr20
Chromosome position6645571
Reported geneBMP2
Mapped geneCASC20 - LOC105372516
Upstream gene id101929244
Downstream gene id105372516
SNP gene ids
Upstream gene distance117112
Downstream gene distance85220
SNP risk allelers2145272-A
SNPsrs2145272
Merged0
SNP id current2145272
Contextintergenic_variant
Intergenic1
Allele frequency0.88
P value0.000000000000009
Pvalue mlog14.0457574905606
P value text
Or beta0.063
%95 Ci[0.041-0.085] unit decrease
PlatformAffymetrix, Illumina [2704730] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002702