SNP Detail For rs2143963
1.Mapping Information
Human SNP ID rs2143963
Human chromosome chr14
Human SNP position 54257205
Pig chromosome chr1
Pig SNP position 204172737
2.Annotation Information
PubMed ID23934736
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23934736
StudyGenome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study.
Disease/TraitMetabolite levels (X-11787)
Initial sample1,260 African American individuals
Replication sampleNA
Region14q22.2
Chromosome idchr14
Chromosome position54257205
Reported geneCDKN3
Mapped geneLOC105370507 - CDKN3
Upstream gene id105370507
Downstream gene id1033
SNP gene ids
Upstream gene distance68726
Downstream gene distance139729
SNP risk allelers2143963-C
SNPsrs2143963
Merged0
SNP id current2143963
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.07
%95 Ci[0.04-0.10] unit increase
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traithydroxy-leucine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005276
Study accessionGCST002119