SNP Detail For rs2143678
1.Mapping Information
Human SNP ID rs2143678
Human chromosome chr6
Human SNP position 41655295
Pig chromosome chr7
Pig SNP position 42143055
2.Annotation Information
PubMed ID21779381
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/21779381
StudyGenetic determinants of cardiovascular events among women with migraine: a genome-wide association study.
Disease/TraitCardiovascular disease risk factors
Initial sample5,122 European ancestry female migrain cases
Replication sampleNA
Region6p21.1
Chromosome idchr6
Chromosome position41655295
Reported geneMDF1
Mapped geneMDFI - NPM1P51
Upstream gene id4188
Downstream gene id100130606
SNP gene ids
Upstream gene distance1049
Downstream gene distance11515
SNP risk allelers2143678-?
SNPsrs2143678
Merged0
SNP id current2143678
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text(migraineurs with aura - major CVD)
Or beta3.05
%95 Ci[1.98-4.96]
PlatformIllumina [339596]
CNVN
Mapped traitcardiovascular disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000319
Study accessionGCST001157