SNP Detail For rs2143178
1.Mapping Information
Human SNP ID rs2143178
Human chromosome chr22
Human SNP position 39264824
Pig chromosome chr5
Pig SNP position 6260240
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region22q13.1
Chromosome idchr22
Chromosome position39264824
Reported geneNR
Mapped genePDGFB - RPL3
Upstream gene id5155
Downstream gene id6122
SNP gene ids
Upstream gene distance19872
Downstream gene distance48058
SNP risk allelers2143178-?
SNPsrs2143178
Merged
SNP id current2143178
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value5E-38
Pvalue mlog37.3010299956639
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043