SNP Detail For rs2123926
1.Mapping Information
Human SNP ID rs2123926
Human chromosome chr15
Human SNP position 99724313
Pig chromosome chr1
Pig SNP position 154728650
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region15q26.3
Chromosome idchr15
Chromosome position99724313
Reported geneLYSMD4
Mapped geneLYSMD4
Upstream gene id
Downstream gene id
SNP gene ids145748
Upstream gene distance
Downstream gene distance
SNP risk allelers2123926-C
SNPsrs2123926
Merged0
SNP id current2123926
Contextintron_variant
Intergenic0
Allele frequency0.93
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.059
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265