SNP Detail For rs2122554
1.Mapping Information
Human SNP ID rs2122554
Human chromosome chr5
Human SNP position 166530081
Pig chromosome chr16
Pig SNP position 62096699
2.Annotation Information
PubMed ID20585324
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20585324
StudyGenome-wide association study of conduct disorder symptomatology.
Disease/TraitConduct disorder (symptom count)
Initial sample872 European, African American and other ancestry substance dependence cases, 3,091 European, African American and other ancestry controls
Replication sampleNA
Region5q34
Chromosome idchr5
Chromosome position166530081
Reported geneintergenic
Mapped geneLOC105377705 - LOC105377706
Upstream gene id105377705
Downstream gene id105377706
SNP gene ids
Upstream gene distance296706
Downstream gene distance315540
SNP risk allelers2122554-A
SNPsrs2122554
Merged0
SNP id current2122554
Contextintergenic_variant
Intergenic1
Allele frequency0.162
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.1
%95 Ci[NR] unit decrease
PlatformIllumina [948658]
CNVN
Mapped traitconduct disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004216
Study accessionGCST000713