SNP Detail For rs2121875
1.Mapping Information
Human SNP ID rs2121875
Human chromosome chr5
Human SNP position 44365443
Pig chromosome chr16
Pig SNP position 30294627
2.Annotation Information
PubMed ID21743467
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21743467
StudySeven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study.
Disease/TraitProstate cancer
Initial sample6,621 European ancestry cases, 6,939 European ancestry controls
Replication sample22,957 European ancestry cases, 23,234 European ancestry controls, 420 East Asian ancestry cases, 433 East Asian ancestry controls, 112 African American cases, 298 African American controls, 7,140 cases, 5,455 controls
Region5p12
Chromosome idchr5
Chromosome position44365443
Reported geneFGF10
Mapped geneFGF10
Upstream gene id
Downstream gene id
SNP gene ids2255
Upstream gene distance
Downstream gene distance
SNP risk allelers2121875-G
SNPsrs2121875
Merged0
SNP id current2121875
Contextintron_variant
Intergenic0
Allele frequency0.34
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.05
%95 Ci[1.02-1.08]
PlatformNR [2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001148