Human SNP ID | rs2120243 |
---|---|
Human chromosome | chr3 |
Human SNP position | 157429779 |
Pig chromosome | chr13 |
Pig SNP position | 105434915 |
PubMed ID | 26870257 |
---|---|
Journal | Oncol Lett |
Link | www.ncbi.nlm.nih.gov/pubmed/26870257 |
Study | Nine susceptibility loci for hepatitis B virus-related hepatocellular carcinoma identified by a pilot two-stage genome-wide association study. |
Disease/Trait | Hepatocellular carcinoma in hepatitis B infection |
Initial sample | 50 Han Chinese ancestry seropositive cases, 50 Han Chinese ancestry seropositive controls |
Replication sample | 282 Han Chinese ancestry seropositive cases, 278 Han Chinese ancestry seropositive controls |
Region | 3q25.32 |
Chromosome id | chr3 |
Chromosome position | 157429779 |
Reported gene | VEPH1 |
Mapped gene | VEPH1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79674 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2120243-? |
SNPs | rs2120243 |
Merged | |
SNP id current | 2120243 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.76 |
%95 Ci | 1.39-2.22 |
Platform | Affymetrix [279757] |
CNV | N |
Mapped trait | hepatocellular carcinoma, hepatitis B infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000182, http://www.ebi.ac.uk/efo/EFO_0004197 |
Study accession | GCST003189 |