SNP Detail For rs2120243
1.Mapping Information
Human SNP ID rs2120243
Human chromosome chr3
Human SNP position 157429779
Pig chromosome chr13
Pig SNP position 105434915
2.Annotation Information
PubMed ID26870257
JournalOncol Lett
Linkwww.ncbi.nlm.nih.gov/pubmed/26870257
StudyNine susceptibility loci for hepatitis B virus-related hepatocellular carcinoma identified by a pilot two-stage genome-wide association study.
Disease/TraitHepatocellular carcinoma in hepatitis B infection
Initial sample50 Han Chinese ancestry seropositive cases, 50 Han Chinese ancestry seropositive controls
Replication sample282 Han Chinese ancestry seropositive cases, 278 Han Chinese ancestry seropositive controls
Region3q25.32
Chromosome idchr3
Chromosome position157429779
Reported geneVEPH1
Mapped geneVEPH1
Upstream gene id
Downstream gene id
SNP gene ids79674
Upstream gene distance
Downstream gene distance
SNP risk allelers2120243-?
SNPsrs2120243
Merged
SNP id current2120243
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.76
%95 Ci1.39-2.22
PlatformAffymetrix [279757]
CNVN
Mapped traithepatocellular carcinoma, hepatitis B infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000182, http://www.ebi.ac.uk/efo/EFO_0004197
Study accessionGCST003189