Human SNP ID | rs212016 |
---|---|
Human chromosome | chr3 |
Human SNP position | 59995799 |
Pig chromosome | chr13 |
Pig SNP position | 45808606 |
PubMed ID | 22419666 |
---|---|
Journal | Am J Med Genet A |
Link | www.ncbi.nlm.nih.gov/pubmed/22419666 |
Study | Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts. |
Disease/Trait | Orofacial clefts |
Initial sample | 1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads |
Replication sample | NA |
Region | 3p14.2 |
Chromosome id | chr3 |
Chromosome position | 59995799 |
Reported gene | FHIT |
Mapped gene | FHIT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2272 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs212016-? |
SNPs | rs212016 |
Merged | 0 |
SNP id current | 212016 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.69 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (CL) |
Or beta | 1.54 |
%95 Ci | [1.89-1.27] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | Orofacial clefting syndrome |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_139039 |
Study accession | GCST001442 |