SNP Detail For rs2118674
1.Mapping Information
Human SNP ID rs2118674
Human chromosome chr2
Human SNP position 170462384
Pig chromosome chr15
Pig SNP position 86066726
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitPalmitoleic acid (16:1n-7) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region2q31.1
Chromosome idchr2
Chromosome position170462384
Reported geneMY03B
Mapped geneMYO3B
Upstream gene id
Downstream gene id
SNP gene ids140469
Upstream gene distance
Downstream gene distance
SNP risk allelers2118674-A
SNPsrs2118674
Merged0
SNP id current2118674
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.0498
%95 Ciunit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001841