SNP Detail For rs211718
1.Mapping Information
Human SNP ID rs211718
Human chromosome chr1
Human SNP position 75640990
Pig chromosome chr15
Pig SNP position 117334558
2.Annotation Information
PubMed ID21886157
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21886157
StudyHuman metabolic individuality in biomedical and pharmaceutical research.
Disease/TraitMetabolic traits
Initial sample2,820 European ancestry individuals
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position75640990
Reported geneACADM
Mapped geneSLC44A5
Upstream gene id
Downstream gene id
SNP gene ids204962
Upstream gene distance
Downstream gene distance
SNP risk allelers211718-T
SNPsrs211718
Merged0
SNP id current211718
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.304
P value2E-71
Pvalue mlog70.698970004336
P value text(SM-5 + 17 other traits)
Or beta0.16
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [534665]
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST001217
PubMed ID20037589
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20037589
StudyA genome-wide perspective of genetic variation in human metabolism.
Disease/TraitMetabolite levels
Initial sample1,029 European ancestry individuals
Replication sample1,202 European ancestry individuals
Region1p31.1
Chromosome idchr1
Chromosome position75640990
Reported geneACADM
Mapped geneSLC44A5
Upstream gene id
Downstream gene id
SNP gene ids204962
Upstream gene distance
Downstream gene distance
SNP risk allelers211718-C
SNPsrs211718
Merged0
SNP id current211718
Contextdownstream_gene_variant
Intergenic0
Allele frequency0.31
P value1E-63
Pvalue mlog63
P value text(C12/C10)
Or beta14.6
%95 Ci[NR] % variance
PlatformAffymetrix [517480]
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST000550