Human SNP ID | rs2113334 |
---|---|
Human chromosome | chr16 |
Human SNP position | 13882499 |
Pig chromosome | chr3 |
Pig SNP position | 30445604 |
PubMed ID | 20694148 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/20694148 |
Study | A genome-wide association study of the metabolic syndrome in Indian Asian men. |
Disease/Trait | Metabolic syndrome |
Initial sample | 2,554 Indian Asian ancestry individuals |
Replication sample | 2,240 Indian Asian ancestry individuals |
Region | 16p13.12 |
Chromosome id | chr16 |
Chromosome position | 13882499 |
Reported gene | ERCC4 |
Mapped gene | SHISA9 - LOC105371093 |
Upstream gene id | 729993 |
Downstream gene id | 105371093 |
SNP gene ids | |
Upstream gene distance | 319580 |
Downstream gene distance | 349 |
SNP risk allele | rs2113334-? |
SNPs | rs2113334 |
Merged | 0 |
SNP id current | 2113334 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.41 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (WHR) |
Or beta | |
%95 Ci | |
Platform | Illumina [308011] |
CNV | N |
Mapped trait | waist-hip ratio, metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST000753 |