SNP Detail For rs2113334
1.Mapping Information
Human SNP ID rs2113334
Human chromosome chr16
Human SNP position 13882499
Pig chromosome chr3
Pig SNP position 30445604
2.Annotation Information
PubMed ID20694148
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20694148
StudyA genome-wide association study of the metabolic syndrome in Indian Asian men.
Disease/TraitMetabolic syndrome
Initial sample2,554 Indian Asian ancestry individuals
Replication sample2,240 Indian Asian ancestry individuals
Region16p13.12
Chromosome idchr16
Chromosome position13882499
Reported geneERCC4
Mapped geneSHISA9 - LOC105371093
Upstream gene id729993
Downstream gene id105371093
SNP gene ids
Upstream gene distance319580
Downstream gene distance349
SNP risk allelers2113334-?
SNPsrs2113334
Merged0
SNP id current2113334
Contextintergenic_variant
Intergenic1
Allele frequency0.41
P value0.000003
Pvalue mlog5.52287874528033
P value text(WHR)
Or beta
%95 Ci
PlatformIllumina [308011]
CNVN
Mapped traitwaist-hip ratio, metabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST000753