SNP Detail For rs2108258
1.Mapping Information
Human SNP ID rs2108258
Human chromosome chr7
Human SNP position 20752375
Pig chromosome chr9
Pig SNP position 99030562
2.Annotation Information
PubMed ID23259602
JournalBMC Oral Health
Linkwww.ncbi.nlm.nih.gov/pubmed/23259602
StudyGenome-wide association scan of dental caries in the permanent dentition.
Disease/TraitDental caries
Initial sample1,483 European ancestry comparatively younger individuals, 5,960 European ancestry comparatively older individuals
Replication sampleNA
Region7p21.1
Chromosome idchr7
Chromosome position20752375
Reported geneABCB5
Mapped geneABCB5
Upstream gene id
Downstream gene id
SNP gene ids340273
Upstream gene distance
Downstream gene distance
SNP risk allelers2108258-?
SNPsrs2108258
Merged0
SNP id current2108258
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Comparatively Older)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 1400000] (imputed)
CNVN
Mapped traitdental caries
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003819
Study accessionGCST001786