SNP Detail For rs2089222
1.Mapping Information
Human SNP ID rs2089222
Human chromosome chr12
Human SNP position 116564853
Pig chromosome chr14
Pig SNP position 38040941
2.Annotation Information
PubMed ID19684603
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19684603
StudyGermline genomic variants associated with childhood acute lymphoblastic leukemia.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample317 European ancestry cases, 17,958 European ancestry controls
Replication sampleNA
Region12q24.22
Chromosome idchr12
Chromosome position116564853
Reported geneKRTHB5
Mapped geneMAP1LC3B2
Upstream gene id
Downstream gene id
SNP gene ids643246
Upstream gene distance
Downstream gene distance
SNP risk allelers2089222-A
SNPsrs2089222
Merged0
SNP id current2089222
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta2.26
%95 Ci[1.60-3.0]
PlatformAffymetrix [307944]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST000464