Human SNP ID | rs2086512 |
---|---|
Human chromosome | chr6 |
Human SNP position | 98563625 |
Pig chromosome | chr1 |
Pig SNP position | 74143920 |
PubMed ID | 21993531 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/21993531 |
Study | Genome-wide association study does not reveal major genetic determinants for anti-cytomegalovirus antibody response. |
Disease/Trait | Cytomegalovirus antibody response |
Initial sample | 1,485 European ancestry sero-postitive individuals, 648 European ancestry sero-negative individuals |
Replication sample | NA |
Region | 6q16.1 |
Chromosome id | chr6 |
Chromosome position | 98563625 |
Reported gene | intergenic |
Mapped gene | LOC105377910 - POU3F2 |
Upstream gene id | 105377910 |
Downstream gene id | 5454 |
SNP gene ids | |
Upstream gene distance | 43783 |
Downstream gene distance | 271079 |
SNP risk allele | rs2086512-A |
SNPs | rs2086512 |
Merged | 0 |
SNP id current | 2086512 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.06 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.324 |
%95 Ci | [0.18-0.47] unit increase |
Platform | Illumina [546677] |
CNV | N |
Mapped trait | response to virus |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0009615 |
Study accession | GCST001272 |