SNP Detail For rs2086452
1.Mapping Information
Human SNP ID rs2086452
Human chromosome chr15
Human SNP position 100188458
Pig chromosome chr1
Pig SNP position 155027334
2.Annotation Information
PubMed ID23727862
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23727862
StudyGenome-wide association study identifies two susceptibility loci for osteosarcoma.
Disease/TraitOsteosarcoma
Initial sample694 European ancestry cases, 2,703 European ancestry controls
Replication sample247 European ancestry cases, 550 European ancestry controls
Region15q26.3
Chromosome idchr15
Chromosome position100188458
Reported geneADAMTS17
Mapped geneADAMTS17
Upstream gene id
Downstream gene id
SNP gene ids170691
Upstream gene distance
Downstream gene distance
SNP risk allelers2086452-C
SNPsrs2086452
Merged0
SNP id current2086452
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta1.35
%95 Ci[1.19-1.52]
PlatformIllumina [698968]
CNVN
Mapped traitosteosarcoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000637
Study accessionGCST002056