Human SNP ID | rs2086452 |
---|---|
Human chromosome | chr15 |
Human SNP position | 100188458 |
Pig chromosome | chr1 |
Pig SNP position | 155027334 |
PubMed ID | 23727862 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23727862 |
Study | Genome-wide association study identifies two susceptibility loci for osteosarcoma. |
Disease/Trait | Osteosarcoma |
Initial sample | 694 European ancestry cases, 2,703 European ancestry controls |
Replication sample | 247 European ancestry cases, 550 European ancestry controls |
Region | 15q26.3 |
Chromosome id | chr15 |
Chromosome position | 100188458 |
Reported gene | ADAMTS17 |
Mapped gene | ADAMTS17 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 170691 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2086452-C |
SNPs | rs2086452 |
Merged | 0 |
SNP id current | 2086452 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.19-1.52] |
Platform | Illumina [698968] |
CNV | N |
Mapped trait | osteosarcoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000637 |
Study accession | GCST002056 |