Human SNP ID | rs2082412 |
---|---|
Human chromosome | chr5 |
Human SNP position | 159290781 |
Pig chromosome | chr16 |
Pig SNP position | 70031381 |
PubMed ID | 19169254 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19169254 |
Study | Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways. |
Disease/Trait | Psoriasis |
Initial sample | 1,359 European ancestry cases, 1,400 European ancestry controls |
Replication sample | 5,048 European ancestry cases, 5,041 European ancestry controls |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 159290781 |
Reported gene | IL12B |
Mapped gene | UBLCP1 - LOC105377683 |
Upstream gene id | 134510 |
Downstream gene id | 105377683 |
SNP gene ids | |
Upstream gene distance | 4741 |
Downstream gene distance | 20011 |
SNP risk allele | rs2082412-G |
SNPs | rs2082412 |
Merged | 0 |
SNP id current | 2082412 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.8 |
P value | 2E-28 |
Pvalue mlog | 27.698970004336 |
P value text | |
Or beta | 1.44 |
%95 Ci | [NR] |
Platform | Perlegen [~ 2500000] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST000322 |
PubMed ID | 26626624 |
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26626624 |
Study | Genome-wide Association Analysis of Psoriatic Arthritis and Cutaneous Psoriasis Reveals Differences in Their Genetic Architecture. |
Disease/Trait | Cutaneous psoriasis |
Initial sample | 1,363 European ancestry cases, 4,934 European ancestry controls |
Replication sample | up to 2,969 European ancestry cases, up to European ancestry 14,384 controls |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 159290781 |
Reported gene | IL12B |
Mapped gene | UBLCP1 - LOC105377683 |
Upstream gene id | 134510 |
Downstream gene id | 105377683 |
SNP gene ids | |
Upstream gene distance | 4741 |
Downstream gene distance | 20011 |
SNP risk allele | rs2082412-G |
SNPs | rs2082412 |
Merged | 0 |
SNP id current | 2082412 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | |
Or beta | 1.35 |
%95 Ci | NR |
Platform | Illumina [11532644] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST003269 |