Human SNP ID | rs2080401 |
---|---|
Human chromosome | chr2 |
Human SNP position | 170684313 |
Pig chromosome | chr15 |
Pig SNP position | 86260414 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | LDL cholesterol |
Initial sample | 7,565 African American individuals |
Replication sample | 3,789 African American and Afro-Caribbean individuals |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 170684313 |
Reported gene | intergenic |
Mapped gene | LOC100130256 - LOC101926913 |
Upstream gene id | 100130256 |
Downstream gene id | 101926913 |
SNP gene ids | |
Upstream gene distance | 1254 |
Downstream gene distance | 16055 |
SNP risk allele | rs2080401-A |
SNPs | rs2080401 |
Merged | 0 |
SNP id current | 2080401 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.62 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 0.0723 |
%95 Ci | [0.041-0.104] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST000975 |
PubMed ID | 26105758 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26105758 |
Study | A genome-wide association study identifies multiple loci for variation in human ear morphology. |
Disease/Trait | Lobe size |
Initial sample | 4,919 Latin American individuals |
Replication sample | NA |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 170684313 |
Reported gene | SP5 |
Mapped gene | LOC100130256 - LOC101926913 |
Upstream gene id | 100130256 |
Downstream gene id | 101926913 |
SNP gene ids | |
Upstream gene distance | 1254 |
Downstream gene distance | 16055 |
SNP risk allele | rs2080401-C |
SNPs | rs2080401 |
Merged | 0 |
SNP id current | 2080401 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.6 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | |
Or beta | 0.096 |
%95 Ci | unit decrease |
Platform | Illumina [671038] |
CNV | N |
Mapped trait | lobe size |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007666 |
Study accession | GCST002999 |
PubMed ID | 26105758 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26105758 |
Study | A genome-wide association study identifies multiple loci for variation in human ear morphology. |
Disease/Trait | Lobe attachment |
Initial sample | 4,919 Latin American individuals |
Replication sample | NA |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 170684313 |
Reported gene | SP5 |
Mapped gene | LOC100130256 - LOC101926913 |
Upstream gene id | 100130256 |
Downstream gene id | 101926913 |
SNP gene ids | |
Upstream gene distance | 1254 |
Downstream gene distance | 16055 |
SNP risk allele | rs2080401-C |
SNPs | rs2080401 |
Merged | 0 |
SNP id current | 2080401 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.6 |
P value | 0.000000000009 |
Pvalue mlog | 11.0457574905606 |
P value text | |
Or beta | 0.071 |
%95 Ci | unit decrease |
Platform | Illumina [671038] |
CNV | N |
Mapped trait | lobe attachment |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007667 |
Study accession | GCST002998 |
PubMed ID | 26105758 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26105758 |
Study | A genome-wide association study identifies multiple loci for variation in human ear morphology. |
Disease/Trait | Ear morphology |
Initial sample | 4,919 Latin American individuals |
Replication sample | NA |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 170684313 |
Reported gene | SP5 |
Mapped gene | LOC100130256 - LOC101926913 |
Upstream gene id | 100130256 |
Downstream gene id | 101926913 |
SNP gene ids | |
Upstream gene distance | 1254 |
Downstream gene distance | 16055 |
SNP risk allele | rs2080401-C |
SNPs | rs2080401 |
Merged | 0 |
SNP id current | 2080401 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.6 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [671038] |
CNV | N |
Mapped trait | outer ear morphology trait |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007664 |
Study accession | GCST003001 |