SNP Detail For rs2079742
1.Mapping Information
Human SNP ID rs2079742
Human chromosome chr17
Human SNP position 61388336
Pig chromosome chr12
Pig SNP position 38350108
2.Annotation Information
PubMed ID23263486
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23263486
StudyGenome-wide association analyses identify 18 new loci associated with serum urate concentrations.
Disease/TraitUrate levels
Initial sample49,825 European ancestry males, 60,522 European ancestry females
Replication sampleUp to 32,813 European ancestry individuals
Region17q23.2
Chromosome idchr17
Chromosome position61388336
Reported geneBCAS3, C17orf82
Mapped geneBCAS3
Upstream gene id
Downstream gene id
SNP gene ids54828
Upstream gene distance
Downstream gene distance
SNP risk allelers2079742-T
SNPsrs2079742
Merged0
SNP id current2079742
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.85
P value0.00000001
Pvalue mlog8
P value text
Or beta0.043
%95 Ci[0.027-0.059] mg/dl increase
PlatformAffymetrix, Illumina, Perlegen [2450547] (imputed)
CNVN
Mapped traiturate measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004531
Study accessionGCST001791