Human SNP ID | rs2075876 |
---|---|
Human chromosome | chr21 |
Human SNP position | 44289270 |
Pig chromosome | chr13 |
Pig SNP position | 217030889 |
PubMed ID | 21505073 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21505073 |
Study | The human AIRE gene at chromosome 21q22 is a genetic determinant for the predisposition to rheumatoid arthritis in Japanese population. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 1,247 Japanese ancestry cases, 1,486 Japanese ancestry controls |
Replication sample | 4,168 Japanese ancestry cases, 5,003 Japanese ancestry controls |
Region | 21q22.3 |
Chromosome id | chr21 |
Chromosome position | 44289270 |
Reported gene | AIRE, PFKL |
Mapped gene | AIRE |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 326 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2075876-A |
SNPs | rs2075876 |
Merged | 0 |
SNP id current | 2075876 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.11-1.24] |
Platform | Illumina [241523] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST001042 |