SNP Detail For rs2075555
1.Mapping Information
Human SNP ID rs2075555
Human chromosome chr17
Human SNP position 50196930
Pig chromosome chr12
Pig SNP position 26414174
2.Annotation Information
PubMed ID17903305
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17903305
StudyA genome-wide association study of breast and prostate cancer in the NHLBI__s Framingham Heart Study.
Disease/TraitBreast cancer
Initial sample58 cases, 665 controls
Replication sampleNA
Region17q21.33
Chromosome idchr17
Chromosome position50196930
Reported geneCOL1A1
Mapped geneCOL1A1
Upstream gene id
Downstream gene id
SNP gene ids1277
Upstream gene distance
Downstream gene distance
SNP risk allelers2075555-?
SNPsrs2075555
Merged0
SNP id current2075555
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix [70897]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST000079