SNP Detail For rs2075423
1.Mapping Information
Human SNP ID rs2075423
Human chromosome chr1
Human SNP position 213981376
Pig chromosome chr9
Pig SNP position 142484539
2.Annotation Information
PubMed ID24509480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24509480
StudyGenome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Disease/TraitType 2 diabetes
Initial sample12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ance
Replication sample21,491 European ancestry cases, 55,647 European ancestry controls
Region1q32.3
Chromosome idchr1
Chromosome position213981376
Reported genePROX1
Mapped genePROX1-AS1
Upstream gene id
Downstream gene id
SNP gene ids100505832
Upstream gene distance
Downstream gene distance
SNP risk allelers2075423-G
SNPsrs2075423
Merged0
SNP id current2075423
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.66
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.08
%95 Ci[1.04-1.12]
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002352