Human SNP ID | rs2074518 |
---|---|
Human chromosome | chr17 |
Human SNP position | 34997363 |
Pig chromosome | chr12 |
Pig SNP position | 41721296 |
PubMed ID | 19305408 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19305408 |
Study | Common variants at ten loci influence QT interval duration in the QTGEN Study. |
Disease/Trait | QT interval |
Initial sample | 13,685 European ancestry individuals |
Replication sample | 15,854 European ancestry individuals |
Region | 17q12 |
Chromosome id | chr17 |
Chromosome position | 34997363 |
Reported gene | LIG3, RFFL |
Mapped gene | LIG3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3980 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2074518-T |
SNPs | rs2074518 |
Merged | 0 |
SNP id current | 2074518 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.46 |
P value | 0.000000000006 |
Pvalue mlog | 11.2218487496163 |
P value text | |
Or beta | 1.05 |
%95 Ci | [0.71-1.39] msec decrease |
Platform | Affymetrix, Illumina [up to 2543686] (imputed) |
CNV | N |
Mapped trait | QT interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682 |
Study accession | GCST000363 |