SNP Detail For rs2074518
1.Mapping Information
Human SNP ID rs2074518
Human chromosome chr17
Human SNP position 34997363
Pig chromosome chr12
Pig SNP position 41721296
2.Annotation Information
PubMed ID19305408
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19305408
StudyCommon variants at ten loci influence QT interval duration in the QTGEN Study.
Disease/TraitQT interval
Initial sample13,685 European ancestry individuals
Replication sample15,854 European ancestry individuals
Region17q12
Chromosome idchr17
Chromosome position34997363
Reported geneLIG3, RFFL
Mapped geneLIG3
Upstream gene id
Downstream gene id
SNP gene ids3980
Upstream gene distance
Downstream gene distance
SNP risk allelers2074518-T
SNPsrs2074518
Merged0
SNP id current2074518
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.46
P value0.000000000006
Pvalue mlog11.2218487496163
P value text
Or beta1.05
%95 Ci[0.71-1.39] msec decrease
PlatformAffymetrix, Illumina [up to 2543686] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST000363