Human SNP ID | rs2074488 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31272654 |
Pig chromosome | chr7 |
Pig SNP position | 24726377 |
PubMed ID | 23144326 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/23144326 |
Study | Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease. |
Disease/Trait | Chronic obstructive pulmonary disease-related biomarkers |
Initial sample | Up to 1,951 European ancestry smokers |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31272654 |
Reported gene | HLA-C |
Mapped gene | HLA-C - RPL3P2 |
Upstream gene id | 3107 |
Downstream gene id | 116935 |
SNP gene ids | |
Upstream gene distance | 518 |
Downstream gene distance | 7637 |
SNP risk allele | rs2074488-T |
SNPs | rs2074488 |
Merged | 0 |
SNP id current | 2074488 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.13 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | (SP-D) |
Or beta | |
%95 Ci | |
Platform | Illumina [588352] |
CNV | N |
Mapped trait | chronic obstructive pulmonary disease, surfactant protein D measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005081 |
Study accession | GCST001737 |