SNP Detail For rs2074488
1.Mapping Information
Human SNP ID rs2074488
Human chromosome chr6
Human SNP position 31272654
Pig chromosome chr7
Pig SNP position 24726377
2.Annotation Information
PubMed ID23144326
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/23144326
StudyGenome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.
Disease/TraitChronic obstructive pulmonary disease-related biomarkers
Initial sampleUp to 1,951 European ancestry smokers
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31272654
Reported geneHLA-C
Mapped geneHLA-C - RPL3P2
Upstream gene id3107
Downstream gene id116935
SNP gene ids
Upstream gene distance518
Downstream gene distance7637
SNP risk allelers2074488-T
SNPsrs2074488
Merged0
SNP id current2074488
Contextupstream_gene_variant
Intergenic1
Allele frequency0.13
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(SP-D)
Or beta
%95 Ci
PlatformIllumina [588352]
CNVN
Mapped traitchronic obstructive pulmonary disease, surfactant protein D measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005081
Study accessionGCST001737