SNP Detail For rs2074404
1.Mapping Information
Human SNP ID rs2074404
Human chromosome chr17
Human SNP position 46788073
Pig chromosome JH118614-1
Pig SNP position 79585
2.Annotation Information
PubMed ID20190752
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20190752
StudyMultiple common variants for celiac disease influencing immune gene expression.
Disease/TraitCeliac disease
Initial sample4,533 European ancestry cases, 10,750 European ancestry controls
Replication sample4,918 European ancestry cases, 5,684 European ancestry controls
Region17q21.31
Chromosome idchr17
Chromosome position46788073
Reported geneintergenic
Mapped geneWNT3
Upstream gene id
Downstream gene id
SNP gene ids7473
Upstream gene distance
Downstream gene distance
SNP risk allelers2074404-?
SNPsrs2074404
Merged0
SNP id current2074404
Contextintron_variant
Intergenic0
Allele frequency0.75
P value0.000001
Pvalue mlog6
P value text
Or beta1.11
%95 Ci[1.06-1.16]
PlatformIllumina [292387]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST000612