SNP Detail For rs2073398
1.Mapping Information
Human SNP ID rs2073398
Human chromosome chr22
Human SNP position 24603137
Pig chromosome chr14
Pig SNP position 53064030
2.Annotation Information
PubMed ID22001757
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22001757
StudyGenome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.
Disease/TraitLiver enzyme levels (gamma-glutamyl transferase)
Initial sampleUp to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals
Replication sampleNA
Region22q11.23
Chromosome idchr22
Chromosome position24603137
Reported geneGGT1, GGTLC2
Mapped geneGGT1
Upstream gene id
Downstream gene id
SNP gene ids2678
Upstream gene distance
Downstream gene distance
SNP risk allelers2073398-G
SNPsrs2073398
Merged0
SNP id current2073398
Contextintron_variant
Intergenic0
Allele frequency0.34
P value1E-109
Pvalue mlog109
P value text
Or beta12.3
%95 Ci[10.90-13.70] % increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traitserum gamma-glutamyl transferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004532
Study accessionGCST001277