SNP Detail For rs2073145
1.Mapping Information
Human SNP ID rs2073145
Human chromosome chr20
Human SNP position 57615578
Pig chromosome chr17
Pig SNP position 65143274
2.Annotation Information
PubMed ID19668339
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/19668339
StudyHippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease.
Disease/TraitHippocampal atrophy
Initial sample162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases
Replication sampleNA
Region20q13.31
Chromosome idchr20
Chromosome position57615578
Reported geneZBP1
Mapped geneZBP1
Upstream gene id
Downstream gene id
SNP gene ids81030
Upstream gene distance
Downstream gene distance
SNP risk allelers2073145-?
SNPsrs2073145
Merged0
SNP id current2073145
Contextmissense_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [516645]
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST000461