SNP Detail For rs2072910
1.Mapping Information
Human SNP ID rs2072910
Human chromosome chr20
Human SNP position 9384656
Pig chromosome chr17
Pig SNP position 20662778
2.Annotation Information
PubMed ID20172861
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20172861
StudyCommon variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count.
Disease/TraitNeutrophil count
Initial sample5,771 Japanese ancestry individuals
Replication sample1,894 Japanese ancestry individuals
Region20p12.2
Chromosome idchr20
Chromosome position9384656
Reported genePLCB4
Mapped genePLCB4
Upstream gene id
Downstream gene id
SNP gene ids5332
Upstream gene distance
Downstream gene distance
SNP risk allelers2072910-C
SNPsrs2072910
Merged0
SNP id current2072910
Contextintron_variant
Intergenic0
Allele frequency0.3
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta0.11
%95 Ci[0.07-0.15] unit decrease
PlatformIllumina [486091]
CNVN
Mapped traitneutrophil count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004833
Study accessionGCST000600