Human SNP ID | rs2072910 |
---|---|
Human chromosome | chr20 |
Human SNP position | 9384656 |
Pig chromosome | chr17 |
Pig SNP position | 20662778 |
PubMed ID | 20172861 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20172861 |
Study | Common variations in PSMD3-CSF3 and PLCB4 are associated with neutrophil count. |
Disease/Trait | Neutrophil count |
Initial sample | 5,771 Japanese ancestry individuals |
Replication sample | 1,894 Japanese ancestry individuals |
Region | 20p12.2 |
Chromosome id | chr20 |
Chromosome position | 9384656 |
Reported gene | PLCB4 |
Mapped gene | PLCB4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5332 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2072910-C |
SNPs | rs2072910 |
Merged | 0 |
SNP id current | 2072910 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.3 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.07-0.15] unit decrease |
Platform | Illumina [486091] |
CNV | N |
Mapped trait | neutrophil count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004833 |
Study accession | GCST000600 |