SNP Detail For rs2072413
1.Mapping Information
Human SNP ID rs2072413
Human chromosome chr7
Human SNP position 150950881
Pig chromosome chr18
Pig SNP position 6725040
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region7q36.1
Chromosome idchr7
Chromosome position150950881
Reported geneKCNH2
Mapped geneKCNH2
Upstream gene id
Downstream gene id
SNP gene ids3757
Upstream gene distance
Downstream gene distance
SNP risk allelers2072413-T
SNPsrs2072413
Merged0
SNP id current2072413
Contextintron_variant
Intergenic0
Allele frequency0.266
P value1E-49
Pvalue mlog49
P value text
Or beta1.68
%95 Ci[1.46-1.9] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500