SNP Detail For rs2071699
1.Mapping Information
Human SNP ID rs2071699
Human chromosome chr19
Human SNP position 48751247
Pig chromosome chr6
Pig SNP position 49827185
2.Annotation Information
PubMed ID24941225
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24941225
StudyGenetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China.
Disease/TraitElevated serum carcinoembryonic antigen levels
Initial sample1,999 Chinese ancestry individuals
Replication sampleNA
Region19q13.33
Chromosome idchr19
Chromosome position48751247
Reported geneFUT1
Mapped geneFUT1
Upstream gene id
Downstream gene id
SNP gene ids2523
Upstream gene distance
Downstream gene distance
SNP risk allelers2071699-?
SNPsrs2071699
Merged0
SNP id current2071699
Contextmissense_variant
Intergenic0
Allele frequency
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta
%95 Ci
PlatformIllumina [709211] (imputed)
CNVN
Mapped traitserum carcinoembryonic antigen measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005760
Study accessionGCST002485