Human SNP ID | rs2071286 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32212119 |
Pig chromosome | chr7 |
Pig SNP position | 28064035 |
PubMed ID | 25030430 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/25030430 |
Study | Genome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis. |
Disease/Trait | Mixed cryoglobulinemia vasculitis in chronic hepatitis C infection |
Initial sample | 356 European ancestry cases, 447 European ancestry controls |
Replication sample | 92 European ancestry cases, 179 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32212119 |
Reported gene | NOTCH4 |
Mapped gene | NOTCH4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4855 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2071286-? |
SNPs | rs2071286 |
Merged | 0 |
SNP id current | 2071286 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 2.15 |
%95 Ci | [NR] |
Platform | Illumina [899641] |
CNV | N |
Mapped trait | cryoglobulinemia, Chronic Hepatitis C infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005846, http://www.ebi.ac.uk/efo/EFO_0004220 |
Study accession | GCST002534 |