SNP Detail For rs2071286
1.Mapping Information
Human SNP ID rs2071286
Human chromosome chr6
Human SNP position 32212119
Pig chromosome chr7
Pig SNP position 28064035
2.Annotation Information
PubMed ID25030430
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/25030430
StudyGenome-wide association study of hepatitis C virus- and cryoglobulin-related vasculitis.
Disease/TraitMixed cryoglobulinemia vasculitis in chronic hepatitis C infection
Initial sample356 European ancestry cases, 447 European ancestry controls
Replication sample92 European ancestry cases, 179 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32212119
Reported geneNOTCH4
Mapped geneNOTCH4
Upstream gene id
Downstream gene id
SNP gene ids4855
Upstream gene distance
Downstream gene distance
SNP risk allelers2071286-?
SNPsrs2071286
Merged0
SNP id current2071286
Contextintron_variant
Intergenic0
Allele frequency0.29
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta2.15
%95 Ci[NR]
PlatformIllumina [899641]
CNVN
Mapped traitcryoglobulinemia, Chronic Hepatitis C infection
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005846, http://www.ebi.ac.uk/efo/EFO_0004220
Study accessionGCST002534