Human SNP ID | rs2070755 |
---|---|
Human chromosome | chr20 |
Human SNP position | 57562984 |
Pig chromosome | chr17 |
Pig SNP position | 65096938 |
PubMed ID | 26030696 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/26030696 |
Study | A Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes. |
Disease/Trait | Emphysema imaging phenotypes |
Initial sample | 5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls |
Replication sample | NA |
Region | 20q13.31 |
Chromosome id | chr20 |
Chromosome position | 57562984 |
Reported gene | PCK1 |
Mapped gene | PCK1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5105 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2070755-C |
SNPs | rs2070755 |
Merged | |
SNP id current | 2070755 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000005 |
Pvalue mlog | 6.30102999566398 |
P value text | (%LAA-950, All) |
Or beta | 0.11 |
%95 Ci | [0.018-0.202] unit increase |
Platform | Illumina [7600000] (imputed) |
CNV | N |
Mapped trait | emphysema imaging measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007626 |
Study accession | GCST002945 |
PubMed ID | 26030696 |
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/26030696 |
Study | A Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes. |
Disease/Trait | Emphysema imaging phenotypes |
Initial sample | 5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls |
Replication sample | NA |
Region | 20q13.31 |
Chromosome id | chr20 |
Chromosome position | 57562984 |
Reported gene | PCK1 |
Mapped gene | PCK1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5105 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2070755-C |
SNPs | rs2070755 |
Merged | |
SNP id current | 2070755 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (Perc15, All) |
Or beta | 2.5 |
%95 Ci | [0.34-4.66] unit decrease |
Platform | Illumina [7600000] (imputed) |
CNV | N |
Mapped trait | emphysema imaging measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007626 |
Study accession | GCST002945 |