Human SNP ID | rs2069235 |
---|---|
Human chromosome | chr22 |
Human SNP position | 39351775 |
Pig chromosome | chr5 |
Pig SNP position | 6194258 |
PubMed ID | 26394269 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26394269 |
Study | International genome-wide meta-analysis identifies new primary biliary cirrhosis risk loci and targetable pathogenic pathways. |
Disease/Trait | Primary biliary cirrhosis |
Initial sample | 2,764 European ancestry cases, 10,475 European ancestry controls |
Replication sample | 3,716 European ancestry cases, 4,261 European ancestry controls |
Region | 22q13.1 |
Chromosome id | chr22 |
Chromosome position | 39351775 |
Reported gene | SYNGR1, PDGFB |
Mapped gene | SYNGR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9145 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2069235-A |
SNPs | rs2069235 |
Merged | |
SNP id current | 2069235 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.319999999999999 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 1.2658228 |
%95 Ci | NR |
Platform | Illumina [1143634] (imputed) |
CNV | N |
Mapped trait | primary biliary cirrhosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1001486 |
Study accession | GCST003129 |