SNP Detail For rs2066938
1.Mapping Information
Human SNP ID rs2066938
Human chromosome chr12
Human SNP position 120722812
Pig chromosome chr14
Pig SNP position 43105434
2.Annotation Information
PubMed ID21886157
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21886157
StudyHuman metabolic individuality in biomedical and pharmaceutical research.
Disease/TraitMetabolic traits
Initial sample2,820 European ancestry individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position120722812
Reported geneACADS
Mapped geneUNC119B
Upstream gene id
Downstream gene id
SNP gene ids84747
Upstream gene distance
Downstream gene distance
SNP risk allelers2066938-G
SNPsrs2066938
Merged0
SNP id current2066938
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.252
P value4E-305
Pvalue mlog304.397940008672
P value text(SM-1 + 12 other traits)
Or beta0.606
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [534665]
CNVN
Mapped traitmetabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004725
Study accessionGCST001217
PubMed ID24816252
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24816252
StudyAn atlas of genetic influences on human blood metabolites.
Disease/TraitBlood metabolite levels
Initial sample7,824 European ancestry individuals
Replication sampleNA
Region12q24.31
Chromosome idchr12
Chromosome position120722812
Reported geneACADS
Mapped geneUNC119B
Upstream gene id
Downstream gene id
SNP gene ids84747
Upstream gene distance
Downstream gene distance
SNP risk allelers2066938-A
SNPsrs2066938
Merged0
SNP id current2066938
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.74
P value3E-630
Pvalue mlog629.52287874528
P value text(butyrylcarnitine)
Or beta0.211
%95 Ci[0.2-0.22] unit decrease
PlatformAffymetrix, Illumina [2100000] (imputed)
CNVN
Mapped traitblood metabolite measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005664
Study accessionGCST002443