Human SNP ID | rs2062583 |
---|---|
Human chromosome | chr3 |
Human SNP position | 56932218 |
Pig chromosome | chr13 |
Pig SNP position | 42563956 |
PubMed ID | 21452313 |
---|---|
Journal | Arthritis Rheum |
Link | www.ncbi.nlm.nih.gov/pubmed/21452313 |
Study | Genome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 801 Korean ancestry cases, 757 Korean ancestry controls |
Replication sample | 718 Korean ancestry cases, 719 Korean ancestry controls |
Region | 3p14.3 |
Chromosome id | chr3 |
Chromosome position | 56932218 |
Reported gene | ARHGEF3 |
Mapped gene | ARHGEF3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 50650 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2062583-? |
SNPs | rs2062583 |
Merged | 0 |
SNP id current | 2062583 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.59 |
%95 Ci | [1.30-1.92] |
Platform | Illumina [441398] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST001022 |