SNP Detail For rs2062583
1.Mapping Information
Human SNP ID rs2062583
Human chromosome chr3
Human SNP position 56932218
Pig chromosome chr13
Pig SNP position 42563956
2.Annotation Information
PubMed ID21452313
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/21452313
StudyGenome-wide association study of rheumatoid arthritis in Koreans: population-specific loci as well as overlap with European susceptibility loci.
Disease/TraitRheumatoid arthritis
Initial sample801 Korean ancestry cases, 757 Korean ancestry controls
Replication sample718 Korean ancestry cases, 719 Korean ancestry controls
Region3p14.3
Chromosome idchr3
Chromosome position56932218
Reported geneARHGEF3
Mapped geneARHGEF3
Upstream gene id
Downstream gene id
SNP gene ids50650
Upstream gene distance
Downstream gene distance
SNP risk allelers2062583-?
SNPsrs2062583
Merged0
SNP id current2062583
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.59
%95 Ci[1.30-1.92]
PlatformIllumina [441398]
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST001022