Human SNP ID | rs2059614 |
---|---|
Human chromosome | chr11 |
Human SNP position | 125389528 |
Pig chromosome | chr9 |
Pig SNP position | 58153438 |
PubMed ID | 25890600 |
---|---|
Journal | J Natl Cancer Inst |
Link | www.ncbi.nlm.nih.gov/pubmed/25890600 |
Study | Identification of novel genetic markers of breast cancer survival. |
Disease/Trait | Breast cancer (survival) |
Initial sample | 23,059 European ancestry estrogen-receptor positive cases, 6,881 European ancestry estrogen-receptor negative cases, 8,014 European ancestry cases |
Replication sample | |
Region | 11q24.2 |
Chromosome id | chr11 |
Chromosome position | 125389528 |
Reported gene | HEPACAM, HEPN1, CCDC15, SLC37A2, TMEM218, FEZ1, MGC39545, STT3A, CHEK1, ACRV1, PATE1, PATE2, PATE3, PATE4, HYLS1, PKNOX2, ROBO4 |
Mapped gene | PKNOX2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 63876 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2059614-? |
SNPs | rs2059614 |
Merged | 0 |
SNP id current | 2059614 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | (ER -ve) |
Or beta | 1.9 |
%95 Ci | [1.54-2.33] |
Platform | Affymetrix, Illumina [9000000] (imputed) |
CNV | N |
Mapped trait | estrogen-receptor negative breast cancer, survival time |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_1000650, http://www.ebi.ac.uk/efo/EFO_0000714 |
Study accession | GCST002861 |