SNP Detail For rs2057314
1.Mapping Information
Human SNP ID rs2057314
Human chromosome chr6
Human SNP position 117498194
Pig chromosome chr1
Pig SNP position 49704169
2.Annotation Information
PubMed ID23266556
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266556
StudyIdentification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis.
Disease/TraitColorectal cancer
Initial sample12,696 European ancestry colorectal tumor cases, 15,113 European ancestry controls
Replication sample958 European ancestry colorectal tumor cases, 909 European ancestry controls, up to 2,098 East Asian ancestry colorectal tumor cases, up to 5,749 East Asian ancestry controls
Region6q22.1
Chromosome idchr6
Chromosome position117498194
Reported geneDCBLD1, GOPC
Mapped geneDCBLD1
Upstream gene id
Downstream gene id
SNP gene ids285761
Upstream gene distance
Downstream gene distance
SNP risk allelers2057314-?
SNPsrs2057314
Merged0
SNP id current2057314
Contextintron_variant
Intergenic0
Allele frequency0.5
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.08
%95 Ci[1.04-1.11]
PlatformAffymetrix, Illumina [2708280] (imputed)
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001787